Course at EMBL-EBI

Gene-environment interactions in human health and disease

  • Course overview
  • How to apply
  • Additional information
  • Competencies

This introductory course explores the complex interplay between genes and the environment in shaping human phenotypes. Participants will gain knowledge of cohort datasets, environmental readouts, and computational resources to investigate gene-environment interactions. Ethical and legal frameworks related to data privacy, consent, and genetic discrimination will be discussed. The course also covers computational modelling techniques for integrating genotype and environmental effects. By the end, attendees will be equipped to analyse cohort datasets, make use of computational resources, and interpret the results. 

Please note that you will not analyse your own data as part of the course. There will, however, be ample opportunity to discuss your research and ideas with other course participants and trainers

Who is this course for?

This introductory course is  aimed at MRes/PhD students, researchers, clinicians, and other professionals working in the fields of genomics, exposomics, epidemiology, or toxicology with an interest in understanding how interactions between genes and the environment underlie human phenotypes. The course will cover the underlying concepts, computational resources, and computational modelling methods available to investigate interactions between genes and the environment (including social, biological, and physical exposures). No prior bioinformatics skills are required although a basic understanding of statistics and Unix experience would be helpful.

Prerequisites

We recommend all successful applicants acquire/brush up on their basic command line skills before attending the course. R Studio experience is also required. There are many tutorials available online and here are some that may be of help.

To complete the following suggested tutorials you may want to install Ubuntu for Windows Users if you are using a computer with a Windows Operating System.

  • Basic introduction to the Unix environment
  • Hands-on programming with R

Course content

This course is currently under development. Please refer to the previous edition of this course for an example programme.

This course is currently under development. Click to register your interest using the button on the right hand side of this course website to hear as the course develops.

Accommodation 

Hotel rooms will be provided onsite at Hinxton Hall Conference Centre . Please contact them directly if you wish to arrange to stay additional nights around the course dates.

The course includes catering as detailed on the programme tab. Successful applicants will be asked for any dietary requirements and allergies upon registration. 

All participants are expected to present a poster that will be displayed during the course outside the training room. Successful applicants will be asked to submit their poster upon registration. We will print these for you and have them available when you arrive on site.

All posters should:

•         be A2 in size – 420mm x 594 mm •         be in a portrait orientation •         include your photograph and contact information

We expect the posters to act as a talking point between you, other participants, and the trainers on the course. The posters will be displayed throughout the week so people can view them during breaks and lunch. They should give the reader an idea of the work you are engaged in, what you are planning to do next, and anything of interest that might be useful for sharing with the gathered participants.

  • Dayane Rodrigues Araujo EMBL-EBI
  • Amy Louise Foreman EMBL-EBI
  • Mallory Freeberg EMBL-EBI
  • Saskia Hiltemann Erasmus MC

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PhD-course on Scientific Integrity

This one-day course is compulsory for PhD students. During the course various issues will be addressed, such as authorship rules, where to go to if you suspect scientific misconduct and how to stay a person of integrity.

Target Audience: Promovendus/onderzoeker/PhD Student

A one day course on research integrity. Taught by experienced teachers.

  • Scientific misconduct
  • Where can I go to in the Erasmus MC
  • Rules on authorship
  • How to stay a person of integrity

Practical information

Start dates 2022 .

For registration course dates after April 5th 2022, please click here: Graduate School

During Covid-19 we plan the course to be given online through zoom, from 1:00 p.m - 5:30 p.m, till October 1st. After October 1st, 2021 we will start with live courses in the Erasmus MC from 1:00 p.m - 5:30 p.m.

Approximately two weeks before the course date you will receive homework assignments and the general information.

Preparations

Apply and terms and conditions.

We strongly suggest that you follow this course in the second year of your research project, so that all attendees have sufficient experience with research practices. 

For new course dates, please click here: Graduate School

Terms and conditions

Not successfully finishing the course day or cancellation less than two weeks before the course date, will lead to an invoice of €150 submitted to the head of Department.

Departments and research centers

Medical ethics, philosophy and history of medicine.

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Kaluga Oblast, Russia

The capital city of Kaluga oblast: Kaluga .

Kaluga Oblast - Overview

Kaluga Oblast is a federal subject of Russia located in the center of the European part of the country, about 94 km south-west of Moscow, part of the Central Federal District. Kaluga is the capital city of the region.

The population of Kaluga Oblast is about 1,013,000 (2022), the area - 29,777 sq. km.

Kaluga oblast flag

Kaluga oblast coat of arms.

Kaluga oblast coat of arms

Kaluga oblast map, Russia

Kaluga oblast latest news and posts from our blog:.

11 November, 2023 / Fairy-tale park-courtyard "Vikhlyandiya" in Kozelsk .

26 September, 2018 / St. Paphnutius of Borovsk Monastery .

22 April, 2018 / Shamordino Convent in the Kaluga region .

22 October, 2017 / Museum of the History of Cosmonautics in Kaluga .

15 March, 2017 / Winter in the Art Park Nikola-Lenivets .

More posts..

History of Kaluga Oblast

The first mention of towns on the territory of the present Kaluga region appeared in the 12th century: Kozelsk (1146), Serensk (1147), Vorotynsk (1155), Mosalsk (1231).

In the 14th century, this region was a place of constant confrontation between Lithuania and Moscow. Kaluga was founded as a border fortress to protect the Moscow principality against the attacks of Lithuania.

In 1480, an important event for the Russian history took place in the region - “Standing on the Ugra River”. As a result, the Mongol-Tatar yoke ended in the north and north-east of Russia and Russian state became fully independent.

July 5, 1944, Kaluga Oblast was formed. It included 27 districts of Smolensk, Orel and Tula oblasts.

Beautiful nature of Kaluga Oblast

Kaluga Oblast scenery

Kaluga Oblast scenery

Author: Kapustin Alexander

Flowering field in Kaluga Oblast

Flowering field in Kaluga Oblast

Author: Alexander Kuguchin

Summer in Kaluga Oblast

Summer in Kaluga Oblast

Author: Yuriy Luchin

Kaluga Oblast - Features

Kaluga Oblast is located in the central part of the East European Plain. Most of the area is occupied by plains, fields and forests with diverse flora and fauna. Forests cover about 45% of the Kaluga region.

The climate is temperate continental with distinct seasons: summers are moderately hot and humid, winters are moderately cold with permanent snow. The average temperature in July is about plus 18 degrees Celsius, in January - minus 9 degrees Celsius. The warm period (with temperatures above zero) lasts 215-220 days.

The urban population is about 765,000 (76%). The largest cities and towns are Kaluga (335,600), Obninsk (121,500), Ludinovo (36,300), Kirov (29,600), Maloyaroslavets (28,500), Balabanovo (26,900).

It is one of the most economically developed Russian regions. Such large international companies like Volkswagen, Volvo, Peugeot, Citroen, Mitsubishi, GE, Samsung, Continental, Berlin-Chemie/Menarini, Novo Nordisk, STADA CIS have their projects here. The main industries are machine building and metalworking, chemical, food and light industry. From 2007 to 2015, the Kaluga automobile manufacturers produced more than 1,146,000 vehicles.

Obninsk is the first Russian specialized scientific city (“naukograd”) conducting research in nuclear energy, outer space machinery and radio equipment.

The main transportation junctures of the region are Kaluga, Obninsk and Sukhinichi. M3 “Ukraine” is the main highway. The federal highway A101 Moscow-Warsaw (“Old Polish”, “Varshavka”) is of great importance too. Besides, the highway P132 Vyazma-Kaluga-Tula-Ryazan is of regional importance as well as part of A108 passing through Balabanovo.

The region is crossed by the railroad connecting Moscow and Kiev (the capital of Ukraine). Part of the Oka River flowing from Kaluga is among Russian waterways, there are cruises from Serpukhov to Tarusa, Velegozh available.

Tourism in Kaluga Oblast

Tourism in the Kaluga region is developing in several key areas: rural tourism, cultural and educational, sports, environmental tourism. About 30% of the territory is occupied by the National Park “Ugra”. The most popular tours offer a visit to historic towns and villages: Borovsk, Maloyaroslavets, Tarusa, Kozelsk, Zhukov, Kaluga, Obninsk, Polotnyanyy Zavod.

On the territory of the Kaluga region there are a lot of resorts and sanatoriums that specialize in medical and health tourism. Medical institutions are located in ecologically clean areas (pine forests, parks) near rivers and lakes.

Main Attractions of Kaluga Oblast

The State Museum of the History of Cosmonautics named after K.E. Tsiolkovsky in Kaluga - the world’s first and largest in Russia space museum.

Kaluga United Museum-Reserve - one of the oldest museums in Russia (1897) with a collection that has more than 100,000 exhibits.

The Cultural and Education Center “ETNOMIR” - a variety of buildings (including craft shops, a museum, a traditional restaurant, a gift shop) that acquaint visitors with the traditional life of different peoples. Petrovo village, Borovsky district (90 km from Moscow by Kiev or Minsk highway).

The Bird Park “Sparrows” - the first bird park in Russia with a diverse collection (more than 200 species of birds from all over the world). Zhukovsky district, 20 km from Obninsk, on the banks of the Istya River.

The Art Park “Nikola-Lenivets” - the only art park in Russia that has landscape installations, land art objects made by the best Russian and foreign artists, many of which have become iconic for contemporary art. Dzerzhinsky district, Nikola-Lenivets village, about 80 km from Kaluga.

The Optina Pustyn Monastery - the symbol of spiritual revival of the late 18th century Russia. Today, about 200 monks live in the monastery. It is the largest monastery in the country located 3 km from Kozelsk.

Borovsk - a great place to feel the atmosphere of an old Russian provincial town.

Kaluga oblast of Russia photos

Pictures of kaluga oblast.

Small river in the Kaluga region

Small river in the Kaluga region

Author: Maks Kuzmin

Winter in Kaluga Oblast

Winter in Kaluga Oblast

Author: Roman Ledov

Kaluga Oblast landscape

Kaluga Oblast landscape

Author: Peter Sobolev

Orthodox chapel in the Kaluga region

Orthodox chapel in Kaluga Oblast

Orthodox chapel in Kaluga Oblast

Author: Yury Milyokhin

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Course registration

Course registration  Erasmus MC Graduate School courses are offered via the  EUR Course catalogue . More information about a course can be found by clicking on the name of the course under the course description. In order to register for a course, a valid student ERNA account is needed. It is not possible to register with an Erasmus MC work account. A student ERNA account can be created when enrolling for a course for the first time, as shown in the picture below.  Please read how to reactivate an old ERNA account that has been deactivated below.  Please do not create a new ERNA ID if you already have one!  

Please note the following: 

  • A course is only open for registration when there is a green button ‘Enrol for course’ on the top right corner of the pop-up.  
  • Registration has not opened yet. Registration opening dates will be communicated via the newsletter.   
  • Registration for the course has been closed. Please check the course description when the registration of the course closed.  
  • If the maximum number of participants has been reached, there will be a notification when trying to register for the course.  
  • There are no waiting lists for courses. If a participant deregisters for a course, the spot will become available again, and it will be possible to register for the spot via the course catalogue. 
  • Courses with less than 10 participants will be cancelled or rescheduled.  

phd courses erasmus mc

Academic year and course dates.   Erasmus MC Graduate School works with an academic calendar that run from August until July. (e.g., when a course starts in May 2023, it belongs to the academic year ‘2022’). Course dates will be either mentioned in the course description or be available in the course description via a link. The dates mentioned under ‘enrolment period’ only refer to the Academic year itself and not the course dates.   Re-activate student ERNA account  ERNA accounts are currently valid for 3 months only. If you have an old ERNA account or if your current ERNA account has been deactivated, please contact [email protected] to reactivate your account.   Reset Password   If you forgot the password for your student ERNA account, please contact Graduate School.

Problems logging in:  You cannot log in to OSIRIS or other EUR educational systems (Education Catalogue, OSIRIS, Academy Attendance, Canvas, etc.) with your Erasmus MC credentials. You must use your EUR student ERNA ID. You should then choose "Erasmus University Rotterdam" through SurfConext and use your student ERNA ID (e.g., [email protected]) and password.   If you continue to have problems logging in, please first try the following:  

  • Try again by using an incognito tab.
  • Try again using a different Internet browser
  • Try again after deleting the cookies and cache from the Internet browser.  

If the abovementioned still does not help, send an e-mail to [email protected] with a screenshot of the error.  Course confirmation and course information  The ERNA account also includes a student e-mail address. which will be used to inform about course related issues. The student e-mail can be accessed through OSIRIS, and directly through the link:  https://outlook.office.com/mail/inbox (Login using the ERNA account). Please note that all essential information regarding subscribed course will be sent to this e-mail address. It is therefore important to check this e-mail address regularly.  

Forwarding student mails   To not miss any essential information regarding subscribed courses, we advise to forward the e-mails send to the student ERNA account.  Forwarding instruction:  1. Log into  www.outlook.office.com with the student ERNA e-mail address.   2. Click on the gear icon at the top right and then on “View all Outlook settings” at the bottom of the page.   3. In the Settings screen, choose “Mail” and then “Forwarding.”  4. Check the box “Enable forwarding.” Enter the e-mail address to which the e-mails should be forwarded to.   5. Click “Save” to save the new setting.   Unable to access Canvas course page  The Canvas course page will be locked/unable to access until it has been published. We aim to publish the Canvas course page one week prior to the start of the course. An invitation and message to join the page will be sent to the student ERNA email address. If you have not received an invitation two weeks before for the start of the course, please contact  [email protected] , depending on the course you are following.  Note to EMC employees: When you have previously logged into Canvas on your device with your Erasmus MC account, it automatically takes those credentials the next time you log in. We advise you to use an incognito tab in Google Chrome in order to log in with your ERNA account to view the course specifics.

Editing account information ERNA ID/Canvas  To adjust personal details of the student ERNA account in OSIRIS or Canvas, like name, contact:  [email protected] . You will have to provide them with a copy of your ID so that they can make the adjustments. Please cover any personal details that you do not wish to share.

PhD Test Course

phd courses erasmus mc

In the PhD Course Agenda we include all courses that the Erasmus MC organises. At the top of each course page you can find additional information and a registration link in de catalogus.

Offline and Online courses We offer offline and online courses. If the course is online, you can find that in the course title. Please check carefully if the course you would like to attend is offline or online.

eBROK® (Basic course Rules and Organisation for Clinical researchers) (PHDCO-002)

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Scientific Integrity (PHDCO-001)

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  1. PhD Courses

    Erasmus MC Graduate School courses are offered via the EUR course catalogue. Please find more information about course fees and the cancellation policy here. Course overview. Below you will find a list of all PhD education and training that Erasmus MC Graduate School offers, divided over the PhD tracks. Click on the course link to go to the EUR ...

  2. PhD-programmes

    Completing a PhD is a requirement to become a university professor, researcher, or scientist in many fields. During your PhD trajectory, you will follow several courses and workshops and attend conferences, all geared towards enhancing your research and networking skills. Our PhD programmes are offered by Erasmus MC Graduate School.

  3. Tracks and Courses

    For this reason the PhD courses are divided into four PhD Tracks: Core: a track with courses that are applicable for all PhD candidates (such as Scientific Integrity, Academic writing, personal development) Health Sciences. Clinical Sciences. Biomedical Sciences. Irrespective of PhD track, Erasmus MC PhD candidates are welcome to follow any PhD ...

  4. PhD at Erasmus MC

    Erasmus MC Graduate School supports PhD candidates to become independent researchers capable of solving complex questions based on scientific evidence. Our support goes beyond offering courses. Our support is focused on an enjoyable and successful PhD journey, on the well-being of PhD candidates and supervisor, on collaboration and networking ...

  5. STIP

    Erasmus MC Graduate School fully covers the costs including the exam of this course for all Erasmus MC PhD candidates and Research Master students. The re-exam is only covered for Research Master students, not for PhD candidates. Please mention your OSIRIS student number (the first six digits of your ERNA account) and mention the ...

  6. PhD Tracks

    Tracks and Courses ; PhD at Erasmus MC Graduate School. ... PhD at Erasmus MC Graduate School. Share this page. Subnavigation. PhD Tracks . Obtaining a PhD position; PhD at Erasmus MC; PhD Education; Open navigation for PhD Tracks Close . Compare @count study programme . Close

  7. STIP

    The goal of the PhD programs at Erasmus MC is to help you become an independent researcher who is able to solve complex questions, based on scientific evidence. During your PhD at Erasmus MC, you are part of a big international community and get to work in a state-of-the art facility. Graduates will have the competencies to appraise scientific ...

  8. STIP

    Welcome to the Student Information Portal of PhD Candidates. STiP answers your questions about your study or programme. Overview. About STIP. Feedback. Hora Finita. TSP. Courses. Evaluation forms.

  9. STIP

    The doctoral regulations for obtaining a PhD degree at Erasmus University and further information on the practicalities of getting the degree are available at the following page of the EUR. Read everything about obtaining a doctor's degree in the doctoral regulations of Erasmus University Rotterdam. Erasmus MC Guidelines for PhD Projects

  10. Erasmus MC Graduate School

    Erasmus MC Graduate School provides outstanding Research Masters and PhD programmes to educate and train future world-class biomedical academics in the clinical, health science and/or biomedical field and in a stimulating international environment.. Erasmus MC enables graduates to become an independent researcher able to solve complex questions, based on scientific evidence.

  11. PhD Tracks

    PhD education in the Erasmus MC Graduate School is divided over four PhD tracks: a Core track with courses that are applicable for all PhD candidates (such as Scientific Integrity, Academic writing, personal development) and three content-based tracks: Health Sciences, Clinical Sciences and Biomedical Sciences. Please note that irrespective of ...

  12. Erasmus MC

    Erasmus MC - Graduate School is the organization within Erasmus MC that educates and prepares research master students and PhD candidates to become world-class scientists. Our research masters and PhD tracks range from fundamental clinical research to research that is fully intertwined with societal projects.

  13. Gene-environment interactions in human health and disease

    This introductory course is aimed at MRes/PhD students, researchers, clinicians, and other professionals working in the fields of genomics, exposomics, epidemiology, or toxicology with an interest in understanding how interactions between genes and the environment underlie human phenotypes. The course will cover the underlying concepts ...

  14. Obninsk Nuclear Power Plant

    Obninsk Nuclear Power Plant (Russian: Обнинская АЭС, romanized: Obninskaja AES; pronunciation ⓘ) was built in the "Science City" of Obninsk, [1] Kaluga Oblast, about 110 km (68 mi) southwest of Moscow, Soviet Union.Connected to the power grid in June 1954, Obninsk was the first grid-connected nuclear power plant in the world, [2] i.e. the first nuclear reactor that produced ...

  15. PhD Programme application

    Since nearly all PhD students at Erasmus MC have their position based on a research grant or their own PhD scholarship it is recommended to mention that you, once accepted by the professor, will apply for a PhD scholarship. This could be a CSC, a university-based or university hospital-based PhD scholarship. Obtaining a scholarship may feel as ...

  16. Erasmus MC Graduate School

    Thinkers who act. Erasmus MC Graduate School is the central place for PhD and research master students within the (bio)medical research field. These research master programs and PhD tracks within Erasmus MC are offered through Erasmus University Rotterdam (EUR). Research Masters. PhD Trajectory.

  17. PhD-course on Scientific Integrity

    Program. During Covid-19 we plan the course to be given online through zoom, from 1:00 p.m - 5:30 p.m, till October 1st. October 1st, 2021 we will start with live courses in the Erasmus MC from 1:00 p.m - 5:30 p.m. Approximately two weeks before the course date you will receive homework assignments and the general information.

  18. STIP

    All applicants that wish to fill a PhD position at Erasmus MC must fulfil the following academic requirements: Master degree EUR requires PhD candidates to have a bachelor's degree and a master degree. Provisional admission is possible on the grounds of other Dutch diplomas or non-Dutch diplomas (see Section 2 of the PhD defence rules ...

  19. Flag of Obninsk, Kaluga Oblast, Russia : r/vexillology

    618K subscribers in the vexillology community. A subreddit for those who enjoy learning about flags, their place in society past and present, and…

  20. STIP

    PhD courses and events offered by Erasmus MC Graduate School are free of charge for Erasmus MC PhD candidates 1, Research Master students (electives) 2 and Erasmus MC employees 3. A payment of €1.00 is required for administrative purposes. As PhD courses are primarily intended for PhD candidates, PhD candidates will get priority over other ...

  21. UUVK

    Airport information about UUVK - Kudinovo, KLU, RU. Information on this site may not be accurate or current and is not valid for flight planning or navigation.

  22. Kaluga Oblast, Russia guide

    Kaluga Oblast - Overview. Kaluga Oblast is a federal subject of Russia located in the center of the European part of the country, about 94 km south-west of Moscow, part of the Central Federal District. Kaluga is the capital city of the region. The population of Kaluga Oblast is about 1,013,000 (2022), the area - 29,777 sq. km.

  23. STIP

    Course registration. Erasmus MC Graduate School courses are offered via the EUR Course catalogue. More information about a course can be found by clicking on the name of the course under the course description. In order to register for a course, a valid student ERNA account is needed. It is not possible to register with an Erasmus MC work account.

  24. PhD Test Course

    PhD Test Course. In the PhD Course Agenda we include all courses that the Erasmus MC organises. At the top of each course page you can find additional information and a registration link in de catalogus. We offer offline and online courses. If the course is online, you can find that in the course title. Please check carefully if the course you ...

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